Module: derived

Module Contents

CENTER_NO

number (2,0)

Required:true

Center Identification Number.

Allowable Values
11	Sinai Health Systems (formerly Cancer Care Ontario)
12	Cedars-Sinai & Cleveland Clinic (formerly USC Consortium)
13	University of Melbourne
14	University of Hawaii Cancer Center
15	Mayo Clinic
16	Fred Hutchinson Cancer Center
17	UCSF/University of California at San Franscisco (formerly CPIC, originally NCCC)

1	PERSON_ID	string (12)	Required:true
	Number that uniquely identifies an individual.

C_MLH1

number (1,0)

Required:true

Presence of deleterious mutation or unclassified variant in MLH1 gene

Allowable Values
-8	No data transmitted from centers
-9	Failed or equivocal MLPA result or failed sequencing result
-1	One of the tests (Genomic or MLPA) has been run, and no deleterious variant or unclassified variant detected
1	Both of the tests (Genomics and MLPA) have been run and no deleterious variant or unclassified variant detected
2	One or more deleterious variants detected (Genomic or MLPA) (If 1 should be homozygous)
3	One or more unclassified variants detected (Genomic or MLPA)
4	One or more deleterious AND one or more unclassifed variants detected (Genomic or MLPA)

C_MSH2

number (1,0)

Required:true

Presence of deleterious mutation or unclassified variant in MSH2 gene

Allowable Values
-8	No data transmitted from centers
-9	Failed or equivocal MLPA result or failed sequencing result
-1	One of the tests (Genomic or MLPA) has been run, and no deleterious variant or unclassified variant detected
1	Both of the tests (Genomics and MLPA) have been run and no deleterious variant or unclassified variant detected
2	One or more deleterious variants detected (Genomic or MLPA) (If 1 should be homozygous)
3	One or more unclassified variants detected (Genomic or MLPA)
4	One or more deleterious AND one or more unclassifed variants detected (Genomic or MLPA)

C_MSH6

number (1,0)

Required:true

Presence of deleterious mutation or unclassified variant in MSH6 gene

Allowable Values
-8	No data transmitted from centers
-9	Failed or equivocal MLPA result or failed sequencing result
-1	One of the tests (Genomic or MLPA) has been run, and no deleterious variant or unclassified variant detected
1	Both of the tests (Genomics and MLPA) have been run and no deleterious variant or unclassified variant detected
2	One or more deleterious variants detected (Genomic or MLPA) (If 1 should be homozygous)
3	One or more unclassified variants detected (Genomic or MLPA)
4	One or more deleterious AND one or more unclassifed variants detected (Genomic or MLPA)

C_PMS2

number (1,0)

Required:true

Presence of deleterious mutation or unclassified variant in PMS2 gene

Allowable Values
-8	No data transmitted from centers
-9	Failed or equivocal MLPA result or failed sequencing result
-1	One of the tests (Genomic or MLPA) has been run, and no deleterious variant or unclassified variant detected
1	Both of the tests (Genomics and MLPA) have been run and no deleterious variant or unclassified variant detected
2	One or more deleterious variants detected (Genomic or MLPA) (If 1 should be homozygous)
3	One or more unclassified variants detected (Genomic or MLPA)
4	One or more deleterious AND one or more unclassifed variants detected (Genomic or MLPA)

C_MUTYH

number (1,0)

Required:true

Presence of deleterious mutation or unclassified variant in MUTYH gene

Allowable Values
-8	No data transmitted from centers
-9	Failed or equivocal MLPA result or failed sequencing result
-1	One of the tests (Genomic or MLPA) has been run, and no deleterious variant or unclassified variant detected
1	Both of the tests (Genomics and MLPA) have been run and no deleterious variant or unclassified variant detected
2	One or more deleterious variants detected (Genomic or MLPA) (If 1 should be homozygous)
3	One or more unclassified variants detected (Genomic or MLPA)
4	One or more deleterious AND one or more unclassifed variants detected (Genomic or MLPA)

C_EPCAM

number (1,0)

Required:true

Presence of deleterious mutation or unclassified variant in EPCAM gene

Allowable Values
-8	No data transmitted from centers
-9	Failed or equivocal MLPA result or failed sequencing result
-1	One of the tests (Genomic or MLPA) has been run, and no deleterious variant or unclassified variant detected
1	Both of the tests (Genomics and MLPA) have been run and no deleterious variant or unclassified variant detected
2	One or more deleterious variants detected (Genomic or MLPA) (If 1 should be homozygous)
3	One or more unclassified variants detected (Genomic or MLPA)
4	One or more deleterious AND one or more unclassifed variants detected (Genomic or MLPA)